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Update docs/output.md

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Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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Sofia Stamouli 2023-01-16 12:59:13 +01:00 committed by GitHub
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@ -199,7 +199,7 @@ Note that the FASTQ file(s) may _not_ always be the 'final' reads that go into t
<details markdown="1"> <details markdown="1">
<summary>Output files</summary> <summary>Output files</summary>
- `kraken2/` - `bracken/`
- `bracken_<db_name>_combined_reports.txt`: combined bracken results as output from Bracken's `combine_bracken_outputs.py` script - `bracken_<db_name>_combined_reports.txt`: combined bracken results as output from Bracken's `combine_bracken_outputs.py` script
- `<db_name>/` - `<db_name>/`
- `<sample>_<db_name>.tsv`: TSV file containing per-sample summary of Bracken results with abundance information - `<sample>_<db_name>.tsv`: TSV file containing per-sample summary of Bracken results with abundance information