millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-25 16:59:54 +00:00
Code Issues Releases Packages Activity

Add output configuration for Kraken Krona chart

Browse source
This commit is contained in:
Thomas A. Christensen II 2022-06-14 08:48:16 -05:00
parent ad9bc4b7e9
commit 0e8edd5b2f
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 8 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
conf/modules.config
View file

@ -293,6 +293,14 @@ process {
] ]
} }
withName: KRONA_KTIMPORTTEXT {
publishDir = [
path: { "${params.outdir}/krona" },
mode: params.publish_dir_mode,
pattern: '*.{html}'
]
}
withName: METAPHLAN3 { withName: METAPHLAN3 {
ext.args = { "${meta.db_params}" } ext.args = { "${meta.db_params}" }
ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" } ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }