1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-10 23:53:10 +00:00

Add output configuration for Kraken Krona chart

This commit is contained in:
Thomas A. Christensen II 2022-06-14 08:48:16 -05:00
parent ad9bc4b7e9
commit 0e8edd5b2f
Signed by: millironx
GPG key ID: 139C07724802BC5D

View file

@ -293,6 +293,14 @@ process {
]
}
withName: KRONA_KTIMPORTTEXT {
publishDir = [
path: { "${params.outdir}/krona" },
mode: params.publish_dir_mode,
pattern: '*.{html}'
]
}
withName: METAPHLAN3 {
ext.args = { "${meta.db_params}" }
ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }