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Add output configuration for Kraken Krona chart
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@ -293,6 +293,14 @@ process {
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}
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withName: KRONA_KTIMPORTTEXT {
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publishDir = [
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path: { "${params.outdir}/krona" },
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mode: params.publish_dir_mode,
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pattern: '*.{html}'
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]
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}
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withName: METAPHLAN3 {
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ext.args = { "${meta.db_params}" }
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ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }
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