diff --git a/conf/modules.config b/conf/modules.config
index c834f4e..0abff92 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -55,7 +55,7 @@ process {
             params.shortread_clipmerge_adapter1 ? "--adapter_sequence ${params.shortread_clipmerge_adapter1}" : "",
             // filtering options
             "--length_required ${params.shortread_clipmerge_minlength}",
-           params.perform_shortread_complexityfilter && params.shortread_complexityfilter_tool == 'fastp' ? "--low_complexity_filter --complexity_threshold ${params.shortread_complexityfilter_fastp_threshold}" : ''
+            params.perform_shortread_complexityfilter && params.shortread_complexityfilter_tool == 'fastp' ? "--low_complexity_filter --complexity_threshold ${params.shortread_complexityfilter_fastp_threshold}" : ''
         ].join(' ').trim()
         ext.prefix = { "${meta.id}_${meta.run_accession}" }
         publishDir = [
@@ -76,7 +76,7 @@ process {
             params.shortread_clipmerge_adapter2 ? "--adapter_sequence_r2 ${params.shortread_clipmerge_adapter2}" : "--detect_adapter_for_pe",
             // filtering options
             "--length_required ${params.shortread_clipmerge_minlength}",
-           params.perform_shortread_complexityfilter && params.shortread_complexityfilter_tool == 'fastp' ? "--low_complexity_filter --complexity_threshold ${params.shortread_complexityfilter_fastp_threshold}" : ''
+            params.perform_shortread_complexityfilter && params.shortread_complexityfilter_tool == 'fastp' ? "--low_complexity_filter --complexity_threshold ${params.shortread_complexityfilter_fastp_threshold}" : ''
         ].join(' ').trim()
         ext.prefix = { "${meta.id}_${meta.run_accession}" }
         publishDir = [
diff --git a/nextflow_schema.json b/nextflow_schema.json
index a0a830c..74fab27 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -10,10 +10,7 @@
             "type": "object",
             "fa_icon": "fas fa-terminal",
             "description": "Define where the pipeline should find input data and save output data.",
-            "required": [
-                "input",
-                "outdir"
-            ],
+            "required": ["input", "outdir"],
             "properties": {
                 "input": {
                     "type": "string",
@@ -176,14 +173,7 @@
                     "description": "Method used to save pipeline results to output directory.",
                     "help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
                     "fa_icon": "fas fa-copy",
-                    "enum": [
-                        "symlink",
-                        "rellink",
-                        "link",
-                        "copy",
-                        "copyNoFollow",
-                        "move"
-                    ],
+                    "enum": ["symlink", "rellink", "link", "copy", "copyNoFollow", "move"],
                     "hidden": true
                 },
                 "email_on_fail": {
@@ -304,10 +294,7 @@
         "shortread_clipmerge_tool": {
             "type": "string",
             "default": "fastp",
-            "enum": [
-                "fastp",
-                "adapterremoval"
-            ]
+            "enum": ["fastp", "adapterremoval"]
         },
         "shortread_clipmerge_skipadaptertrim": {
             "type": "boolean"
@@ -333,11 +320,7 @@
         "shortread_complexityfilter_tool": {
             "type": "string",
             "default": "bbduk",
-            "enum": [
-                "bbduk",
-                "prinseqplusplus",
-                "fastp"
-            ]
+            "enum": ["bbduk", "prinseqplusplus", "fastp"]
         },
         "shortread_complexityfilter_bbduk_windowsize": {
             "type": "integer",
@@ -353,10 +336,7 @@
         "shortread_complexityfilter_prinseqplusplus_mode": {
             "type": "string",
             "default": "entropy",
-            "enum": [
-                "entropy",
-                "dust"
-            ]
+            "enum": ["entropy", "dust"]
         },
         "shortread_complexityfilter_prinseqplusplus_dustscore": {
             "type": "number",
@@ -412,14 +392,7 @@
         "kaiju_taxon_name": {
             "type": "string",
             "default": "species",
-            "enum": [
-                "phylum",
-                "class",
-                "order",
-                "family",
-                "genus",
-                "species"
-            ]
+            "enum": ["phylum", "class", "order", "family", "genus", "species"]
         },
         "run_diamond": {
             "type": "boolean"
@@ -427,19 +400,15 @@
         "diamond_output_format": {
             "type": "string",
             "default": "tsv",
-            "enum": [
-                "blast",
-                "xml",
-                "txt",
-                "daa",
-                "sam",
-                "tsv",
-                "paf"
-            ]
+            "enum": ["blast", "xml", "txt", "daa", "sam", "tsv", "paf"]
         },
         "longread_hostremoval_index": {
             "type": "string",
             "default": "None"
+        },
+        "shortread_complexityfilter_fastp_threshold": {
+            "type": "integer",
+            "default": 30
         }
     }
-}
\ No newline at end of file
+}