millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-25 18:59:56 +00:00
Code Issues Releases Packages Activity

Apply suggestions from code review

Browse source
This commit is contained in:
James A. Fellows Yates 2022-12-20 21:48:08 +01:00 committed by GitHub
parent 1706555eff
commit 1279437aa1
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 1 additions and 10 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
nextflow.config
View file

@ -38,7 +38,7 @@ params {
version = false version = false
validate_params = true validate_params = true
show_hidden_params = false show_hidden_params = false
schema_ignore_params = 'genomes' schema_ignore_params = 'genomes,fasta'
// Config options // Config options

9
nextflow_schema.json
View file

@ -712,15 +712,6 @@
"help_text": "If using a reference genome configured in the pipeline using iGenomes, use this parameter to give the ID for the reference. This is then used to build the full paths for all required reference genome files e.g. `--genome GRCh38`. \n\nSee the [nf-core website docs](https://nf-co.re/usage/reference_genomes) for more details.", "help_text": "If using a reference genome configured in the pipeline using iGenomes, use this parameter to give the ID for the reference. This is then used to build the full paths for all required reference genome files e.g. `--genome GRCh38`. \n\nSee the [nf-core website docs](https://nf-co.re/usage/reference_genomes) for more details.",
"hidden": true "hidden": true
}, },
"fasta": {
"type": "string",
"description": "Path to FASTA genome file.",
"help_text": "This parameter is *mandatory* if `--genome` is not specified. If you don't have a BWA index available this will be generated for you automatically. Combine with `--save_reference` to save BWA index for future runs.",
"pattern": "^\\\\S+\\\\.fn?a(sta)?(\\\\.gz)?$",
"format": "file-path",
"mimetype": "text/plain",
"fa_icon": "far fa-file-code"
},
"igenomes_base": { "igenomes_base": {
"type": "string", "type": "string",
"format": "directory-path", "format": "directory-path",