diff --git a/nextflow_schema.json b/nextflow_schema.json index d3878c1..257f5cb 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -431,27 +431,23 @@ }, "longread_hostremoval_index": { "type": "string", - "default": null + "default": "None" }, "save_minimap2_hostremoval_index": { - "type": "string", - "default": "false", + "type": "boolean", "description": "Flag for publishing minimap2 host removal index" }, "save_minimap2_hostremoval_mapped": { - "type": "string", - "default": "false", + "type": "boolean", "description": "Flag for publishinig bam file with all long reads mapped to a reference" }, "save_samtools_unmapped_bam": { - "type": "string", - "default": "false", + "type": "boolean", "description": "Flag for publishing bam for reads that did not map to the host reference" }, "save_minimap2_unmapped_fq": { - "type": "string", - "default": "false", + "type": "boolean", "description": "Flag for publishing fastq files for reads that did not map to the host reference" } } -} +} \ No newline at end of file