From 17039ebc6b143870331c4d2f8976a0fe63de0736 Mon Sep 17 00:00:00 2001
From: ljmesi <37740329+ljmesi@users.noreply.github.com>
Date: Tue, 3 May 2022 11:07:23 +0200
Subject: [PATCH] Fix type to boolean for flags

---
 nextflow_schema.json | 16 ++++++----------
 1 file changed, 6 insertions(+), 10 deletions(-)

diff --git a/nextflow_schema.json b/nextflow_schema.json
index d3878c1..257f5cb 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -431,27 +431,23 @@
         },
         "longread_hostremoval_index": {
             "type": "string",
-            "default": null
+            "default": "None"
         },
         "save_minimap2_hostremoval_index": {
-            "type": "string",
-            "default": "false",
+            "type": "boolean",
             "description": "Flag for publishing minimap2 host removal index"
         },
         "save_minimap2_hostremoval_mapped": {
-            "type": "string",
-            "default": "false",
+            "type": "boolean",
             "description": "Flag for publishinig bam file with all long reads mapped to a reference"
         },
         "save_samtools_unmapped_bam": {
-            "type": "string",
-            "default": "false",
+            "type": "boolean",
             "description": "Flag for publishing bam for reads that did not map to the host reference"
         },
         "save_minimap2_unmapped_fq": {
-            "type": "string",
-            "default": "false",
+            "type": "boolean",
             "description": "Flag for publishing fastq files for reads that did not map to the host reference"
         }
     }
-}
+}
\ No newline at end of file