diff --git a/subworkflows/local/longread_hostremoval.nf b/subworkflows/local/longread_hostremoval.nf index 5b4413f..751f4e1 100644 --- a/subworkflows/local/longread_hostremoval.nf +++ b/subworkflows/local/longread_hostremoval.nf @@ -33,7 +33,7 @@ workflow LONGREAD_HOSTREMOVAL { } - SAMTOOLS_VIEW ( ch_minimap2_mapped , [] ) + SAMTOOLS_VIEW ( ch_minimap2_mapped , [], [] ) ch_versions = ch_versions.mix( SAMTOOLS_VIEW.out.versions.first() ) SAMTOOLS_BAM2FQ ( SAMTOOLS_VIEW.out.bam, false )