From 180cac0395d82d5e91049445c41d26b64caee46f Mon Sep 17 00:00:00 2001 From: "Moritz E. Beber" Date: Wed, 5 Oct 2022 13:49:35 +0200 Subject: [PATCH] fix: adapt to new samtools/view input --- subworkflows/local/longread_hostremoval.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/subworkflows/local/longread_hostremoval.nf b/subworkflows/local/longread_hostremoval.nf index 5b4413f..751f4e1 100644 --- a/subworkflows/local/longread_hostremoval.nf +++ b/subworkflows/local/longread_hostremoval.nf @@ -33,7 +33,7 @@ workflow LONGREAD_HOSTREMOVAL { } - SAMTOOLS_VIEW ( ch_minimap2_mapped , [] ) + SAMTOOLS_VIEW ( ch_minimap2_mapped , [], [] ) ch_versions = ch_versions.mix( SAMTOOLS_VIEW.out.versions.first() ) SAMTOOLS_BAM2FQ ( SAMTOOLS_VIEW.out.bam, false )