millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-22 03:16:06 +00:00
Code Issues Releases Packages Activity

Update docs/output.md

Browse source 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
This commit is contained in:
Sofia Stamouli 2022-12-20 20:23:38 +01:00 committed by GitHub
parent fb9de1e212
commit 18c15f8a78
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
docs/output.md
View file

@ -213,7 +213,7 @@ The main taxonomic profiling file from KrakenUniq is the `*.tsv` file. This prov
- `kraken2/`
- `<db_name>_combined_reports.txt`: A combined profile of all samples aligned to a given database (as generated by `krakentools`)
- <db_name>/
- `<db_name>/`
- `<sample_id>_<db_name>.classified.fastq.gz`: FASTQ file containing all reads that had a hit against a reference in the database for a given sample
- `<sample_id>_<db_name>.unclassified.fastq.gz`: FASTQ file containing all reads that did not have a hit in the database for a given sample
- `<sample_id>_<db_name>.report.txt`: A Kraken2 report that summarises the fraction abundance, taxonomic ID, number of Kmers, taxonomic path of all the hits in the Kraken2 run for a given sample