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Remove double If and format for readability

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James Fellows Yates 2023-01-24 10:48:23 +01:00
parent d56e3133f9
commit 1a148c5d49
1 changed files with 11 additions and 1 deletions
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12
subworkflows/local/db_check.nf
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@ -41,7 +41,17 @@ workflow DB_CHECK {
//Filter the channel to run untar on DBs of tools actually using //Filter the channel to run untar on DBs of tools actually using
ch_input_untar = ch_dbs_for_untar.untar.dump() ch_input_untar = ch_dbs_for_untar.untar.dump()
.filter { params.run_bracken && it[0]['tool'] == 'bracken' || params.run_centrifuge && it[0]['tool'] == 'centrifuge' || || params.run_diamond && it[0]['tool'] == 'diamond' || params.run_kaiju && it[0]['tool'] == 'kaiju' || params.run_kraken2 && it[0]['tool'] == 'kraken2' || params.run_krakenuniq && it [0]['tool'] == 'krakenuniq' || params.run_malt && it[0]['tool'] == 'malt' || params.run_metaphlan3 && it[0]['tool'] == 'metaphlan3' || params.run_motus && it[0]['tool'] == 'motus' } .filter {
params.run_bracken && it[0]['tool'] == 'bracken' ||
params.run_centrifuge && it[0]['tool'] == 'centrifuge' ||
params.run_diamond && it[0]['tool'] == 'diamond' ||
params.run_kaiju && it[0]['tool'] == 'kaiju' ||
params.run_kraken2 && it[0]['tool'] == 'kraken2' ||
params.run_krakenuniq && it [0]['tool'] == 'krakenuniq' ||
params.run_malt && it[0]['tool'] == 'malt' ||
params.run_metaphlan3 && it[0]['tool'] == 'metaphlan3' ||
params.run_motus && it[0]['tool'] == 'motus'
}
UNTAR (ch_input_untar) UNTAR (ch_input_untar)
ch_versions = ch_versions.mix(UNTAR.out.versions.first()) ch_versions = ch_versions.mix(UNTAR.out.versions.first())
ch_final_dbs = ch_dbs_for_untar.skip.mix( UNTAR.out.untar ) ch_final_dbs = ch_dbs_for_untar.skip.mix( UNTAR.out.untar )