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add check for fastq with fasta

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This commit is contained in:
maxibor 2022-02-18 13:27:10 +01:00
parent a6cfa0a1ba
commit 1b893cb039
1 changed files with 6 additions and 0 deletions
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6
bin/check_samplesheet.py
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@ -181,6 +181,12 @@ def check_samplesheet(file_in, file_out):
sample and fasta and not fastq_1 and not fastq_2 sample and fasta and not fastq_1 and not fastq_2
): ## Single-end long reads ): ## Single-end long reads
sample_info.extend(["1", fastq_1, fastq_2, fasta]) sample_info.extend(["1", fastq_1, fastq_2, fasta])
elif fasta and (fastq_1 or fastq_2):
print_error(
"FastQ and FastA files cannot be specified together in the same library!",
"Line",
line,
)
else: else:
print_error("Invalid combination of columns provided!", "Line", line) print_error("Invalid combination of columns provided!", "Line", line)