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add check for fastq with fasta
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@ -181,6 +181,12 @@ def check_samplesheet(file_in, file_out):
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sample and fasta and not fastq_1 and not fastq_2
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): ## Single-end long reads
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sample_info.extend(["1", fastq_1, fastq_2, fasta])
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elif fasta and (fastq_1 or fastq_2):
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print_error(
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"FastQ and FastA files cannot be specified together in the same library!",
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"Line",
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line,
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)
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else:
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print_error("Invalid combination of columns provided!", "Line", line)
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