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Seperate multiqc for filtlong

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sofstam 2022-07-19 13:53:29 +02:00
parent 3f5fa8cc7a
commit 1ba6a08135
1 changed files with 2 additions and 1 deletions
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subworkflows/local/longread_preprocessing.nf
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@ -49,7 +49,8 @@ workflow LONGREAD_PREPROCESSING {
} }
FASTQC_PROCESSED ( ch_processed_reads ) FASTQC_PROCESSED ( ch_processed_reads )
ch_multiqc_files = ch_multiqc_files.mix( FASTQC_PROCESSED.out.zip, FILTLONG.out.log ) ch_multiqc_files = ch_multiqc_files.mix( FASTQC_PROCESSED.out.zip )
ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log.collect{it[1]}.ifEmpty([]))
emit: emit:
reads = ch_processed_reads // channel: [ val(meta), [ reads ] ] reads = ch_processed_reads // channel: [ val(meta), [ reads ] ]