millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-25 18:09:55 +00:00
Code Issues Releases Packages Activity

Start fixing FastQC/Falco display in MultiQC

Browse source
This commit is contained in:
James Fellows Yates 2023-03-06 09:47:26 +01:00
parent a5138ed6e0
commit 1f1c63bb51
1 changed files with 20 additions and 4 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

24
assets/multiqc_config.yml
View file

@ -39,6 +39,10 @@ sp:
diamond: diamond:
contents: "diamond v" contents: "diamond v"
num_lines: 10 num_lines: 10
fastqc/data:
fn_re: ".*[fastqc|falco]_data.txt"
fastqc/zip:
fn: "*_fastqc.zip"
#extra_fn_clean_exts: #extra_fn_clean_exts:
# - '_fastp' # - '_fastp'
@ -49,11 +53,17 @@ top_modules:
- "fastqc": - "fastqc":
name: "FastQC (pre-Trimming)" name: "FastQC (pre-Trimming)"
path_filters: path_filters:
- "*raw_*fastqc.zip" - "*raw*"
path_filters_exclude:
- "*falco*"
- "*processed*"
- "fastqc": - "fastqc":
name: "Falco (pre-Trimming)" name: "Falco (pre-Trimming)"
path_filters: path_filters:
- "*_raw_falco_*_report.html" - "*raw*"
- "*[falco]*"
path_filters_exclude:
- "*processed*"
- "fastp" - "fastp"
- "adapterRemoval" - "adapterRemoval"
- "porechop": - "porechop":
@ -61,11 +71,17 @@ top_modules:
- "fastqc": - "fastqc":
name: "FastQC (post-Trimming)" name: "FastQC (post-Trimming)"
path_filters: path_filters:
- "*_processed_*fastqc.zip" - "*processed*"
path_filters_exclude:
- "*falco*"
- "*raw*"
- "fastqc": - "fastqc":
name: "Falco (post-Trimming)" name: "Falco (post-Trimming)"
path_filters: path_filters:
- "*_processed_falco_*_report.html" - "*processed*"
- "*falco*"
path_filters_exclude:
- "*raw*"
- "bbduk" - "bbduk"
- "prinseqplusplus" - "prinseqplusplus"
- "filtlong" - "filtlong"