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Start fixing FastQC/Falco display in MultiQC

This commit is contained in:
James Fellows Yates 2023-03-06 09:47:26 +01:00
parent a5138ed6e0
commit 1f1c63bb51

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@ -39,6 +39,10 @@ sp:
diamond:
contents: "diamond v"
num_lines: 10
fastqc/data:
fn_re: ".*[fastqc|falco]_data.txt"
fastqc/zip:
fn: "*_fastqc.zip"
#extra_fn_clean_exts:
# - '_fastp'
@ -49,11 +53,17 @@ top_modules:
- "fastqc":
name: "FastQC (pre-Trimming)"
path_filters:
- "*raw_*fastqc.zip"
- "*raw*"
path_filters_exclude:
- "*falco*"
- "*processed*"
- "fastqc":
name: "Falco (pre-Trimming)"
path_filters:
- "*_raw_falco_*_report.html"
- "*raw*"
- "*[falco]*"
path_filters_exclude:
- "*processed*"
- "fastp"
- "adapterRemoval"
- "porechop":
@ -61,11 +71,17 @@ top_modules:
- "fastqc":
name: "FastQC (post-Trimming)"
path_filters:
- "*_processed_*fastqc.zip"
- "*processed*"
path_filters_exclude:
- "*falco*"
- "*raw*"
- "fastqc":
name: "Falco (post-Trimming)"
path_filters:
- "*_processed_falco_*_report.html"
- "*processed*"
- "*falco*"
path_filters_exclude:
- "*raw*"
- "bbduk"
- "prinseqplusplus"
- "filtlong"