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Code Issues Releases Packages Activity

Updata taxpasta

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sofstam 2023-03-13 08:58:59 +01:00
parent b93c7082b8
commit 213f4e4f23
3 changed files with 132 additions and 48 deletions
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172
modules.json
View file

@ -8,217 +8,301 @@
"adapterremoval": {
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},
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"bracken/combinebrackenoutputs": {
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},
"centrifuge/centrifuge": {
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"installed_by": [
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},
"centrifuge/kreport": {
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},
"custom/dumpsoftwareversions": {
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"falco": {
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],
"patch": "modules/nf-core/falco/falco.diff"
},
"fastp": {
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"kaiju/kaiju2table": {
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"krakentools/kreport2krona": {
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"patch": "modules/nf-core/porechop/porechop/porechop-porechop.diff"
},
"prinseqplusplus": {
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},
"taxpasta/merge": {
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"git_sha": "ffa9641ee18f88aff974257cb50ba3cf8f7d143c",
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"untar": {
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]
}
}
}
}
}
}
}

6
modules/nf-core/taxpasta/merge/main.nf generated
View file

@ -2,10 +2,10 @@ process TAXPASTA_MERGE {
tag "$meta.id"
label 'process_single'
conda "bioconda::taxpasta=0.2.0"
conda "bioconda::taxpasta=0.2.3"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/taxpasta:0.2.0--pyhdfd78af_0':
'quay.io/biocontainers/taxpasta:0.2.0--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/taxpasta:0.2.3--pyhdfd78af_0':
'quay.io/biocontainers/taxpasta:0.2.3--pyhdfd78af_0' }"
input:

2
modules/nf-core/taxpasta/merge/meta.yml generated
View file

@ -14,7 +14,7 @@ tools:
homepage: "https://taxpasta.readthedocs.io/"
documentation: "https://taxpasta.readthedocs.io/"
tool_dev_url: "https://github.com/taxprofiler/taxpasta"
doi: ""
licence: "['Apache-2.0']"
input: