diff --git a/subworkflows/local/profiling.nf b/subworkflows/local/profiling.nf index a46a773..291d476 100644 --- a/subworkflows/local/profiling.nf +++ b/subworkflows/local/profiling.nf @@ -281,7 +281,7 @@ workflow PROFILING { .dump(tag: "krakenuniq_premultimap") .multiMap { it -> - reads: [ it[0] + it[2], it[1] ] + reads: [ it[0] + it[2], it[1].flatten() ] db: it[3] } // Hardcode to _always_ produce the report file (which is our basic otput, and goes into)