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Update longread_preprocessing.nf

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Sofia Stamouli 2022-07-19 16:44:08 +02:00 committed by GitHub
parent 171258d545
commit 237e9aa623
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1 changed files with 2 additions and 2 deletions
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subworkflows/local/longread_preprocessing.nf
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@ -30,7 +30,7 @@ workflow LONGREAD_PREPROCESSING {
ch_processed_reads = FILTLONG ( reads.map{ meta, reads -> [meta, [], reads ]} ) ch_processed_reads = FILTLONG ( reads.map{ meta, reads -> [meta, [], reads ]} )
ch_versions = ch_versions.mix(FILTLONG.out.versions.first()) ch_versions = ch_versions.mix(FILTLONG.out.versions.first())
ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log.collect{it[1]}.ifEmpty([])) ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log )
} else { } else {
PORECHOP ( reads ) PORECHOP ( reads )
@ -46,7 +46,7 @@ workflow LONGREAD_PREPROCESSING {
ch_versions = ch_versions.mix(PORECHOP.out.versions.first()) ch_versions = ch_versions.mix(PORECHOP.out.versions.first())
ch_versions = ch_versions.mix(FILTLONG.out.versions.first()) ch_versions = ch_versions.mix(FILTLONG.out.versions.first())
ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log.collect{it[1]}.ifEmpty([])) ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log )
} }