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@ -20,6 +20,7 @@ workflow VISUALIZATION_KRONA {
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*/
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ch_input_profiles = profiles
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.branch {
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centrifuge: it[0]['tool'] == 'centrifuge'
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kraken2: it[0]['tool'] == 'kraken2'
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unknown: true
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}
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@ -28,6 +29,7 @@ workflow VISUALIZATION_KRONA {
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Convert Kraken2 formatted reports into Krona text files
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*/
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ch_kraken_reports = ch_input_profiles.kraken2
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.mix( ch_input_profiles.centrifuge )
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KRAKENTOOLS_KREPORT2KRONA ( ch_kraken_reports )
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ch_krona_text = ch_krona_text.mix( KRAKENTOOLS_KREPORT2KRONA.out.txt )
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ch_versions = ch_versions.mix( KRAKENTOOLS_KREPORT2KRONA.out.versions.first() )
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