diff --git a/docs/usage.md b/docs/usage.md index 8b8b588..4f4c1ac 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -47,6 +47,7 @@ The pipeline will auto-detect whether a sample is single- or paired-end using th A final samplesheet file consisting of both single- and paired-end data, as well as long-read FASTA files may look something like the one below. This is for 6 samples, where `2612` has been sequenced twice. ```console +sample,run_accession,instrument_platform,fastq_1,fastq_2,fasta 2611,ERR5766174,ILLUMINA,,,///fasta/ERX5474930_ERR5766174_1.fa.gz 2612,ERR5766176,ILLUMINA,///fastq/ERX5474932_ERR5766176_1.fastq.gz,///fastq/ERX5474932_ERR5766176_2.fastq.gz, 2612,ERR5766180,ILLUMINA,///fastq/ERX5474936_ERR5766180_1.fastq.gz,,