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Use specific samplesheet for MALT without LR reads due to GHA memory limits

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This commit is contained in:
James Fellows Yates 2023-01-24 10:58:03 +01:00
parent 606ffc0eb1
commit 2439aa69d0
1 changed files with 1 additions and 1 deletions
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2
.github/workflows/ci.yml vendored
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@ -169,5 +169,5 @@ jobs:
- name: Run pipeline with test data - name: Run pipeline with test data
uses: Wandalen/wretry.action@v1.0.11 uses: Wandalen/wretry.action@v1.0.11
with: with:
command: nextflow run ${GITHUB_WORKSPACE} -profile test_nothing,docker --run_malt --outdir ./results command: nextflow run ${GITHUB_WORKSPACE} -profile test_nothing,docker --run_malt --input 'https://github.com/nf-core/test-datasets/raw/taxprofiler/samplesheet_shortreadsonly.csv' --outdir ./results
attempt_limit: 3 attempt_limit: 3