millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-25 01:09:55 +00:00
Code Issues Releases Packages Activity

Use specific samplesheet for MALT without LR reads due to GHA memory limits

Browse source
This commit is contained in:
James Fellows Yates 2023-01-24 10:58:03 +01:00
parent 606ffc0eb1
commit 2439aa69d0
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
.github/workflows/ci.yml vendored
View file

@ -169,5 +169,5 @@ jobs:
- name: Run pipeline with test data
uses: Wandalen/wretry.action@v1.0.11
with:
command: nextflow run ${GITHUB_WORKSPACE} -profile test_nothing,docker --run_malt --outdir ./results
command: nextflow run ${GITHUB_WORKSPACE} -profile test_nothing,docker --run_malt --input 'https://github.com/nf-core/test-datasets/raw/taxprofiler/samplesheet_shortreadsonly.csv' --outdir ./results
attempt_limit: 3