mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-22 01:46:05 +00:00
chore: remove fixme comments
This commit is contained in:
parent
7c1133efb8
commit
246da8a7b0
4 changed files with 0 additions and 6 deletions
|
@ -45,8 +45,6 @@ workflow LONGREAD_HOSTREMOVAL {
|
|||
SAMTOOLS_INDEX ( MINIMAP2_ALIGN.out.bam )
|
||||
ch_versions = ch_versions.mix( SAMTOOLS_INDEX.out.versions.first() )
|
||||
|
||||
// FIXME: This join is performed using entire maps as keys.
|
||||
// Please replace with joining on specific keys instead.
|
||||
bam_bai = MINIMAP2_ALIGN.out.bam
|
||||
.join(SAMTOOLS_INDEX.out.bai)
|
||||
|
||||
|
|
|
@ -87,7 +87,6 @@ workflow PROFILING {
|
|||
[ new_meta, reads, db ]
|
||||
|
||||
}
|
||||
// FIXME: Groups elements in the channel using the meta map as key. Replace with grouping on specific keys.
|
||||
.groupTuple(by: [0,2])
|
||||
.multiMap {
|
||||
meta, reads, db ->
|
||||
|
@ -321,7 +320,6 @@ workflow PROFILING {
|
|||
meta, reads, db_meta, db ->
|
||||
[[id: db_meta.db_name, single_end: meta.single_end], reads, db_meta, db]
|
||||
}
|
||||
// FIXME: Groups elements in the channel using the meta map as key. Replace with grouping on specific keys.
|
||||
.groupTuple(by: [0,2,3])
|
||||
.multiMap {
|
||||
single_meta, reads, db_meta, db ->
|
||||
|
|
|
@ -30,7 +30,6 @@ workflow STANDARDISATION_PROFILES {
|
|||
meta_new.tool = meta.tool == 'metaphlan3' ? 'metaphlan' : meta.tool == 'malt' ? 'megan6' : meta.tool
|
||||
[meta_new, profile]
|
||||
}
|
||||
// FIXME: Groups elements in the channel using the meta map as key. Replace with grouping on specific keys.
|
||||
.groupTuple ()
|
||||
.map { [ it[0], it[1].flatten() ] }
|
||||
|
||||
|
|
|
@ -197,7 +197,6 @@ workflow TAXPROFILER {
|
|||
meta_new.remove('run_accession')
|
||||
[ meta_new, reads ]
|
||||
}
|
||||
// FIXME: Groups elements in the channel using the meta map as key. Replace with grouping on specific keys.
|
||||
.groupTuple()
|
||||
.map {
|
||||
meta, reads ->
|
||||
|
|
Loading…
Reference in a new issue