millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-24 07:19:55 +00:00
Code Issues Releases Packages Activity

refactor: use shorter and more explicit syntax

Browse source
This commit is contained in:
Moritz E. Beber 2022-12-04 21:54:10 +01:00
parent b2088bcbb3
commit 24e5bc5410
1 changed files with 2 additions and 6 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
subworkflows/local/shortread_adapterremoval.nf
View file

@ -40,9 +40,7 @@ workflow SHORTREAD_ADAPTERREMOVAL {
ADAPTERREMOVAL_PAIRED.out.paired_truncated
)
.map { meta, reads ->
def meta_new = meta.clone()
meta_new.single_end = true
[meta_new, reads]
[meta + [single_end: true], reads]
}
.groupTuple()
// Paired-end reads cause a nested tuple during grouping.
@ -63,9 +61,7 @@ workflow SHORTREAD_ADAPTERREMOVAL {
ADAPTERREMOVAL_PAIRED.out.collapsed_truncated
)
.map { meta, reads ->
def meta_new = meta.clone()
meta_new.single_end = true
[meta_new, reads]
[meta + [single_end: true], reads]
}
.groupTuple()
.map { meta, fastq -> [meta, fastq.flatten()] }