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Code Issues Releases Packages Activity

Remove db_name from nextflow.config

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sofstam 2022-04-07 16:27:19 +02:00
parent 606e5da7d5
commit 26779a4420
3 changed files with 7 additions and 5 deletions
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4
conf/test.config
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@ -25,10 +25,10 @@ params {
input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv' input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv'
databases = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/database.csv' databases = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/database.csv'
run_kraken2 = true run_kraken2 = true
run_malt = true run_malt = false
run_metaphlan3 = true run_metaphlan3 = true
run_centrifuge = true run_centrifuge = true
shortread_clipmerge = true shortread_clipmerge = true
longread_clip = false longread_clip = false
shortread_complexityfilter = true shortread_complexityfilter = false
} }

1
nextflow.config
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@ -86,7 +86,6 @@ params {
// centrifuge // centrifuge
run_centrifuge = false run_centrifuge = false
centrifuge_db_name = 'minigut_cf'
centrifuge_save_unaligned = false centrifuge_save_unaligned = false
centrifuge_save_aligned = false centrifuge_save_aligned = false
centrifuge_sam_format = false centrifuge_sam_format = false

5
nextflow_schema.json
View file

@ -358,7 +358,10 @@
"shortread_complexityfilter_prinseqplusplus_mode": { "shortread_complexityfilter_prinseqplusplus_mode": {
"type": "string", "type": "string",
"default": "entropy", "default": "entropy",
"enum": ["entropy", "dust"] "enum": [
"entropy",
"dust"
]
}, },
"shortread_complexityfilter_prinseqplusplus_dustscore": { "shortread_complexityfilter_prinseqplusplus_dustscore": {
"type": "number", "type": "number",