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Remove db_name from nextflow.config
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parent
606e5da7d5
commit
26779a4420
3 changed files with 7 additions and 5 deletions
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@ -25,10 +25,10 @@ params {
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input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv'
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databases = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/database.csv'
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run_kraken2 = true
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run_malt = true
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run_malt = false
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run_metaphlan3 = true
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run_centrifuge = true
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shortread_clipmerge = true
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longread_clip = false
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shortread_complexityfilter = true
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shortread_complexityfilter = false
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}
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@ -86,7 +86,6 @@ params {
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// centrifuge
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run_centrifuge = false
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centrifuge_db_name = 'minigut_cf'
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centrifuge_save_unaligned = false
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centrifuge_save_aligned = false
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centrifuge_sam_format = false
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@ -358,7 +358,10 @@
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"shortread_complexityfilter_prinseqplusplus_mode": {
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"type": "string",
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"default": "entropy",
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"enum": ["entropy", "dust"]
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"enum": [
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"entropy",
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"dust"
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]
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},
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"shortread_complexityfilter_prinseqplusplus_dustscore": {
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"type": "number",
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