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docs: create a schema entry for the new parameter

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Moritz E. Beber 2023-04-01 15:18:46 +02:00
parent 17a9493e6d
commit 2725fe15a9
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7
nextflow_schema.json
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@ -432,6 +432,13 @@
"description": "Turn on saving of KrakenUniq per-read taxonomic assignment file", "description": "Turn on saving of KrakenUniq per-read taxonomic assignment file",
"help_text": "Save a text file that contains a list of each read that had a taxonomic assignment, with information on specific taxonomic taxonomic assignment that that read recieved.\n\n> Modifies tool parameter(s):\n> - krakenuniq: `--output`" "help_text": "Save a text file that contains a list of each read that had a taxonomic assignment, with information on specific taxonomic taxonomic assignment that that read recieved.\n\n> Modifies tool parameter(s):\n> - krakenuniq: `--output`"
}, },
"krakenuniq_batch_size": {
"type": "integer",
"default": 20,
"fa_icon": "far fa-window-restore",
"description": "Set the batch size for KrakenUniq",
"help_text": "Specify the batch size for KrakenUniq. The reference database for KrakenUniq is loaded into memory once in a process and then used to classify many samples. This parameter determines for how many samples at a time."
},
"run_bracken": { "run_bracken": {
"type": "boolean", "type": "boolean",
"description": "Turn on Bracken (and the required Kraken2 prerequisite step).", "description": "Turn on Bracken (and the required Kraken2 prerequisite step).",