From 4289e1f901cbb0381d180904b2b19e090cfbbcd3 Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Tue, 24 Jan 2023 15:42:14 +0100
Subject: [PATCH] Remove metaphlan3 nanopore filter as _sometimes_ it can work

---
 subworkflows/local/profiling.nf | 2 --
 1 file changed, 2 deletions(-)

diff --git a/subworkflows/local/profiling.nf b/subworkflows/local/profiling.nf
index 1fe4cbb..6b5347f 100644
--- a/subworkflows/local/profiling.nf
+++ b/subworkflows/local/profiling.nf
@@ -203,8 +203,6 @@ workflow PROFILING {
                             .filter{
                                 if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample ${it[0].id}."
                                 !it[0].is_fasta
-                                if (it[0].instrument_platform == 'OXFORD_NANOPORE') log.warn "[nf-core/taxprofiler] MetaPhlAn3 has not been evaluated for Nanopore data. Skipping MetaPhlAn3 for sample ${it[0].id}."
-                                !it[0].instrument_platform == 'OXFORD_NANOPORE'
                             }
                             .multiMap {
                                 it ->