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Fix left-over warns from loca modules

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This commit is contained in:
James Fellows Yates 2023-01-20 13:33:43 +01:00
parent d9003924be
commit 2d64628552
3 changed files with 3 additions and 3 deletions
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2
modules/local/ensure_fastq_extension.nf
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@ -2,7 +2,7 @@ process ENSURE_FASTQ_EXTENSION {
tag "$meta.id"
label 'process_low'
conda (params.enable_conda ? "conda-forge::bash=5.0" : null)
conda "conda-forge::bash=5.0
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://containers.biocontainers.pro/s3/SingImgsRepo/biocontainers/v1.2.0_cv2/biocontainers_v1.2.0_cv2.img' :
'biocontainers/biocontainers:v1.2.0_cv2' }"

2
modules/local/kraken2_standard_report.nf
View file

@ -2,7 +2,7 @@ process KRAKEN2_STANDARD_REPORT {
tag "$meta.id"
label 'process_single'
conda (params.enable_conda ? 'conda-forge::sed=4.8' : null)
conda "conda-forge::sed=4.8"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://containers.biocontainers.pro/s3/SingImgsRepo/biocontainers/v1.2.0_cv2/biocontainers_v1.2.0_cv2.img' :
'biocontainers/biocontainers:v1.2.0_cv2' }"

2
modules/local/krona_cleanup.nf
View file

@ -2,7 +2,7 @@ process KRONA_CLEANUP {
tag "$meta.id"
label 'process_low'
conda (params.enable_conda ? "conda-forge::sed=4.7" : null)
conda "conda-forge::sed=4.7"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://containers.biocontainers.pro/s3/SingImgsRepo/biocontainers/v1.2.0_cv1/biocontainers_v1.2.0_cv1.img' :
'biocontainers/biocontainers:v1.2.0_cv1' }"