diff --git a/conf/test.config b/conf/test.config
index d392306..270ad95 100644
--- a/conf/test.config
+++ b/conf/test.config
@@ -30,5 +30,5 @@ params {
     run_centrifuge                = true
     shortread_clipmerge           = true
     longread_clip                 = false
-    shortread_complexityfilter    = false
+    shortread_complexityfilter    = true
 }