From 2e980f1d15ae350d5588bb5350804be7c4d2a6bd Mon Sep 17 00:00:00 2001
From: James Fellows Yates <jfy133@gmail.com>
Date: Tue, 2 May 2023 14:03:44 +0200
Subject: [PATCH] Update CAT_FASTQ module

---
 modules.json                       | 2 +-
 modules/nf-core/cat/fastq/main.nf  | 2 +-
 modules/nf-core/cat/fastq/meta.yml | 3 ++-
 3 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/modules.json b/modules.json
index 5ac3cb0..732388a 100644
--- a/modules.json
+++ b/modules.json
@@ -37,7 +37,7 @@
                     },
                     "cat/fastq": {
                         "branch": "master",
-                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
+                        "git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71",
                         "installed_by": ["modules"]
                     },
                     "centrifuge/centrifuge": {
diff --git a/modules/nf-core/cat/fastq/main.nf b/modules/nf-core/cat/fastq/main.nf
index 8a0b560..4bdec89 100644
--- a/modules/nf-core/cat/fastq/main.nf
+++ b/modules/nf-core/cat/fastq/main.nf
@@ -5,7 +5,7 @@ process CAT_FASTQ {
     conda "conda-forge::sed=4.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
-        'ubuntu:20.04' }"
+        'docker.io/ubuntu:20.04' }"
 
     input:
     tuple val(meta), path(reads, stageAs: "input*/*")
diff --git a/modules/nf-core/cat/fastq/meta.yml b/modules/nf-core/cat/fastq/meta.yml
index c836598..8a39e30 100644
--- a/modules/nf-core/cat/fastq/meta.yml
+++ b/modules/nf-core/cat/fastq/meta.yml
@@ -1,6 +1,7 @@
 name: cat_fastq
 description: Concatenates fastq files
 keywords:
+  - cat
   - fastq
   - concatenate
 tools:
@@ -16,7 +17,7 @@ input:
         Groovy Map containing sample information
         e.g. [ id:'test', single_end:false ]
   - reads:
-      type: list
+      type: file
       description: |
         List of input FastQ files to be concatenated.
 output: