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Fix KrakenUniq Taxpasta issue

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James A. Fellows Yates 2023-02-22 08:24:48 +01:00 committed by GitHub
parent 877f6ca8b3
commit 32c0d8d6a5
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1 changed files with 8 additions and 8 deletions
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16
subworkflows/local/standardisation_profiles.nf
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@ -24,17 +24,17 @@ workflow STANDARDISATION_PROFILES {
//Taxpasta standardisation
ch_input_for_taxpasta = profiles
.map {
meta, profile ->
def meta_new = [:]
meta_new.id = meta.db_name
meta_new.tool = meta.tool == 'metaphlan3' ? 'metaphlan' : meta.tool == 'malt' ? 'megan6' : meta.tool
[meta_new, profile]
}
.groupTuple ()
meta, profile ->
def meta_new = [:]
meta_new.id = meta.db_name
meta_new.tool = meta.tool == 'metaphlan3' ? 'metaphlan' : meta.tool == 'malt' ? 'megan6' : meta.tool
[meta_new, profile]
}
.groupTuple ()
.map { [ it[0], it[1].flatten() ] }
TAXPASTA_MERGE (ch_input_for_taxpasta, [], [])
/*
Split profile results based on tool they come from
*/