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Fix KrakenUniq Taxpasta issue
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1 changed files with 8 additions and 8 deletions
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@ -24,17 +24,17 @@ workflow STANDARDISATION_PROFILES {
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//Taxpasta standardisation
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//Taxpasta standardisation
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ch_input_for_taxpasta = profiles
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ch_input_for_taxpasta = profiles
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.map {
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.map {
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meta, profile ->
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meta, profile ->
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def meta_new = [:]
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def meta_new = [:]
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meta_new.id = meta.db_name
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meta_new.id = meta.db_name
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meta_new.tool = meta.tool == 'metaphlan3' ? 'metaphlan' : meta.tool == 'malt' ? 'megan6' : meta.tool
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meta_new.tool = meta.tool == 'metaphlan3' ? 'metaphlan' : meta.tool == 'malt' ? 'megan6' : meta.tool
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[meta_new, profile]
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[meta_new, profile]
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}
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}
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.groupTuple ()
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.groupTuple ()
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.map { [ it[0], it[1].flatten() ] }
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TAXPASTA_MERGE (ch_input_for_taxpasta, [], [])
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TAXPASTA_MERGE (ch_input_for_taxpasta, [], [])
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/*
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/*
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Split profile results based on tool they come from
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Split profile results based on tool they come from
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*/
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*/
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