diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 3bc0dda..106de1b 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -98,5 +98,7 @@ jobs: echo 'motus,db_mOTU,,db_mOTU' >> 'database_motus.csv' - name: Run pipeline with test data - run: | - nextflow run ${GITHUB_WORKSPACE} -profile test_motus,docker --outdir ./results --databases ./database_motus.csv + uses: Wandalen/wretry.action@v1.0.11 + with: + command: nextflow run ${GITHUB_WORKSPACE} -profile test_motus,docker --outdir ./results --databases ./database_motus.csv + attempt_limit: 3