diff --git a/docs/output.md b/docs/output.md index c410fc0..2fae37a 100644 --- a/docs/output.md +++ b/docs/output.md @@ -332,6 +332,21 @@ The main taxonomic profiling file from MetaPhlAn3 is the `*_profile.txt` file. T - `.out` +### Krona + +[Krona](https://github.com/marbl/Krona) is Krona allows the exploration of (metagenomic) hierarchical data with interactive zooming, multi-layered pie charts. + +Krona charts will be generated by the pipeline for supported tools (Kraken2, Centrifuge, Kaiju, and MALT) + +
+Output files + +- `krona/` + - `_.html`: per-tool/per-database interactive HTML file containing hierarchical piecharts + +
+ +The resulting HTML files can be loaded into your web browser for exploration. Each file will have a dropdown to allow you to switch between each sample aligned against the given database of the tool. ### MultiQC