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@ -410,3 +410,13 @@ We recommend adding the following line to your environment to limit this (typica
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```bash
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NXF_OPTS='-Xms1g -Xmx4g'
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```
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## Troubleshooting and FAQs
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### I get a warning during centrifuge_kreport process with exit status 255.
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When a sample has insufficient hits for abundance estimation, the resulting `report.txt` file will be empty.
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When trying to convert this to a kraken-style report, the conversion tool will exit with a status code `255`, and provide a `WARN`.
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This is **not** an error nor a failure of the pipeline, just your sample has no hits to the provided database when using centrifuge.
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