millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-22 10:19:54 +00:00
Code Issues Releases Packages Activity

Flatten the right thing

Browse source
This commit is contained in:
James Fellows Yates 2022-04-08 13:46:12 +02:00
parent 6c14f2b230
commit 35cb6e042a
2 changed files with 2 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
subworkflows/local/shortread_adapterremoval.nf
View file

@ -67,7 +67,7 @@ workflow SHORTREAD_ADAPTERREMOVAL {
[meta_new, reads]
}
.groupTuple()
.map { meta, fastq -> [meta, fastq] }
.map { meta, fastq -> [meta, fastq.flatten()] }
CAT_FASTQ(ch_concat_fastq)

2
subworkflows/local/shortread_fastp.nf
View file

@ -29,7 +29,7 @@ workflow SHORTREAD_FASTP {
meta, reads ->
def meta_new = meta.clone()
meta_new['single_end'] = true
[ meta_new, reads.flatten() ]
[ meta_new, [ reads ].flatten() ]
}
ch_fastp_reads_prepped = ch_fastp_reads_prepped_pe.mix( FASTP_SINGLE.out.reads )