From 366745bdbe9e4c652dd310430d4612bfa4e11457 Mon Sep 17 00:00:00 2001 From: sofstam Date: Tue, 31 Jan 2023 09:38:43 +0100 Subject: [PATCH] Prettier in usage --- docs/usage.md | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/docs/usage.md b/docs/usage.md index 95bb0a0..c765c68 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -547,12 +547,13 @@ To build a custom Centrifuge database, a user needs to download taxonomy files, In total, you need four components: a tab-separated file mapping sequence IDs to taxonomy IDs (`--conversion-table`), a tab-separated file mapping taxonomy IDs to their parents and rank, up to the root of the tree (`--taxonomy-tree`), a pipe-separated file mapping taxonomy IDs to a name (`--name-table`), and the reference sequences. An example of custom `seqid2taxid.map`: + ``` - NC_001133.9 4392 - NC_012920.1 9606 - NC_001134.8 4392 + NC_001133.9 4392 + NC_012920.1 9606 + NC_001134.8 4392 NC_001135.5 4392 - ``` +``` ```bash centrifuge-download -o taxonomy taxonomy