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Merge pull request #220 from nf-core/sr-lr-guidance

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Add comment about recommendation to split SR/LR
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James A. Fellows Yates 2023-01-24 11:51:18 +01:00 committed by GitHub
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@ -64,6 +64,8 @@ ERR3201952,ERR3201952,OXFORD_NANOPORE,/<path>/<to>/fastq/ERR3201952.fastq.gz,,
> ⚠️ Input FASTQ and FASTA files _must_ be gzipped > ⚠️ Input FASTQ and FASTA files _must_ be gzipped
> ⚠️ While one can include both short-read and long-read data in one run, we recommend that you split these across _two_ pipeline runs and database sheets (see below). This will allow classification optimisation for each data type, and make MultiQC run-reports more readable (due to run statistics having vary large number differences).
| Column | Description | | Column | Description |
| --------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | | --------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `sample` | Unique sample name [required]. | | `sample` | Unique sample name [required]. |