From 3a45c4510161d70e7bf360e25ad621d5ab7f317a Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Tue, 2 May 2023 14:06:51 +0200 Subject: [PATCH] Fix versions of other non-standard containers --- modules/local/kraken2_standard_report.nf | 2 +- modules/local/krona_cleanup.nf | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/local/kraken2_standard_report.nf b/modules/local/kraken2_standard_report.nf index fcd2c32..8fa2521 100644 --- a/modules/local/kraken2_standard_report.nf +++ b/modules/local/kraken2_standard_report.nf @@ -5,7 +5,7 @@ process KRAKEN2_STANDARD_REPORT { conda "conda-forge::sed=4.7" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val(meta), path(report) diff --git a/modules/local/krona_cleanup.nf b/modules/local/krona_cleanup.nf index 082c22b..4b33b73 100644 --- a/modules/local/krona_cleanup.nf +++ b/modules/local/krona_cleanup.nf @@ -5,7 +5,7 @@ process KRONA_CLEANUP { conda "conda-forge::sed=4.7" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val(meta), path(krona, stageAs: 'uncleaned.krona.txt')