mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-13 07:13:10 +00:00
Fix falco publication names
This commit is contained in:
parent
88589fbc53
commit
3b86a22556
2 changed files with 5 additions and 3 deletions
|
@ -33,7 +33,7 @@ process {
|
|||
}
|
||||
|
||||
withName: FALCO {
|
||||
ext.prefix = { "${meta.id}_${meta.run_accession}_raw" }
|
||||
ext.prefix = { "${meta.id}_${meta.run_accession}_raw_falco" }
|
||||
publishDir = [
|
||||
path: { "${params.outdir}/falco/raw" },
|
||||
mode: params.publish_dir_mode,
|
||||
|
@ -42,7 +42,7 @@ process {
|
|||
}
|
||||
|
||||
withName: FALCO_PROCESSED {
|
||||
ext.prefix = { "${meta.id}_${meta.run_accession}_processed" }
|
||||
ext.prefix = { "${meta.id}_${meta.run_accession}_processed_falco" }
|
||||
publishDir = [
|
||||
path: { "${params.outdir}/falco/processed" },
|
||||
mode: params.publish_dir_mode,
|
||||
|
|
4
modules/nf-core/falco/main.nf
generated
4
modules/nf-core/falco/main.nf
generated
|
@ -33,7 +33,9 @@ process FALCO {
|
|||
"""
|
||||
} else {
|
||||
"""
|
||||
falco $args --threads $task.cpus ${reads}
|
||||
[ ! -f ${prefix}_1.fastq.gz ] && ln -s ${reads[0]} ${prefix}_1.fastq.gz
|
||||
[ ! -f ${prefix}_2.fastq.gz ] && ln -s ${reads[1]} ${prefix}_2.fastq.gz
|
||||
falco $args --threads $task.cpus ${prefix}_1.fastq.gz ${prefix}_2.fastq.gz
|
||||
|
||||
cat <<-END_VERSIONS > versions.yml
|
||||
"${task.process}":
|
||||
|
|
Loading…
Reference in a new issue