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Merge pull request #175 from nf-core/schema-clean

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Fix schema location ofr fastqc/falco option
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James A. Fellows Yates 2022-11-29 11:49:27 +01:00 committed by GitHub
commit 3d949a803f
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1 changed files with 9 additions and 10 deletions
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19
nextflow_schema.json
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@ -56,6 +56,14 @@
"description": "Common options across both long and short read preprocessing QC steps", "description": "Common options across both long and short read preprocessing QC steps",
"default": "", "default": "",
"properties": { "properties": {
"preprocessing_qc_tool": {
"type": "string",
"default": "fastqc",
"enum": ["fastqc", "falco"],
"help_text": "Falco is designed as a drop-in replacement for FastQC but written in C++ for faster computation. We particularly recommend using falco when using long reads (due to reduced memory constraints), however is also applicable for short reads.",
"description": "Specify the tool used for quality control of raw sequencing reads",
"fa_icon": "fas fa-tools"
},
"save_preprocessed_reads": { "save_preprocessed_reads": {
"type": "boolean", "type": "boolean",
"fa_icon": "fas fa-save", "fa_icon": "fas fa-save",
@ -724,14 +732,5 @@
{ {
"$ref": "#/definitions/reference_genome_options" "$ref": "#/definitions/reference_genome_options"
} }
], ]
"properties": {
"preprocessing_qc_tool": {
"type": "string",
"default": "fastqc",
"enum": ["fastqc", "falco"],
"help_text": "Falco is designed as a drop-in replacement for FastQC but written in C++ for faster computation. We particularly recommend using falco when using long reads (due to reduced memory constraints), however is also applicable for short reads.",
"description": "Specify the tool used for quality control of raw sequencing reads"
}
}
} }