millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-25 19:59:55 +00:00
Code Issues Releases Packages Activity

Merge pull request #175 from nf-core/schema-clean

Browse source 
Fix schema location ofr fastqc/falco option
This commit is contained in:
James A. Fellows Yates 2022-11-29 11:49:27 +01:00 committed by GitHub
commit 3d949a803f
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 9 additions and 10 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

19
nextflow_schema.json
View file

@ -56,6 +56,14 @@
"description": "Common options across both long and short read preprocessing QC steps", "description": "Common options across both long and short read preprocessing QC steps",
"default": "", "default": "",
"properties": { "properties": {
"preprocessing_qc_tool": {
"type": "string",
"default": "fastqc",
"enum": ["fastqc", "falco"],
"help_text": "Falco is designed as a drop-in replacement for FastQC but written in C++ for faster computation. We particularly recommend using falco when using long reads (due to reduced memory constraints), however is also applicable for short reads.",
"description": "Specify the tool used for quality control of raw sequencing reads",
"fa_icon": "fas fa-tools"
},
"save_preprocessed_reads": { "save_preprocessed_reads": {
"type": "boolean", "type": "boolean",
"fa_icon": "fas fa-save", "fa_icon": "fas fa-save",
@ -724,14 +732,5 @@
{ {
"$ref": "#/definitions/reference_genome_options" "$ref": "#/definitions/reference_genome_options"
} }
], ]
"properties": {
"preprocessing_qc_tool": {
"type": "string",
"default": "fastqc",
"enum": ["fastqc", "falco"],
"help_text": "Falco is designed as a drop-in replacement for FastQC but written in C++ for faster computation. We particularly recommend using falco when using long reads (due to reduced memory constraints), however is also applicable for short reads.",
"description": "Specify the tool used for quality control of raw sequencing reads"
}
}
} }