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Sets correct default for --shortread_qc_mergepairs
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2 changed files with 2 additions and 3 deletions
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@ -65,7 +65,7 @@ params {
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perform_shortread_qc = false
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shortread_qc_tool = 'fastp'
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shortread_qc_skipadaptertrim = false
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shortread_qc_mergepairs = true
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shortread_qc_mergepairs = false
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shortread_qc_includeunmerged = false
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shortread_qc_adapter1 = null
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shortread_qc_adapter2 = null
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@ -122,8 +122,7 @@
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"type": "boolean",
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"fa_icon": "fas fa-toggle-on",
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"description": "Turn on merging of read pairs for paired-end data",
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"default": true,
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"help_text": "Turn on the merging of read-pairs of paired-end short read sequencing data for AdapterRemoval (this is performed automatically with fastp).\n\n> Modifies tool parameter(s):\n> - AdapterRemoval: `--collapse`\n"
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"help_text": "Turn on the merging of read-pairs of paired-end short read sequencing data. \n\n> Modifies tool parameter(s):\n> - AdapterRemoval: `--collapse`\n> - fastp: `-m --merged_out`\n"
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},
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"shortread_qc_includeunmerged": {
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"type": "boolean",
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