diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index a1ece72..7bb2076 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -38,7 +38,7 @@ jobs:
           - "--shortread_clipmerge_tool adapterremoval --shortread_clipmerge_mergepairs --shortread_clipmerge_excludeunmerged"
           - "--shortread_clipmerge_tool adapterremoval --shortread_clipmerge_mergepairs"
           - "--shortread_complexityfilter_tool bbduk"
-          - "--shortread_complexityfilter_tool prinseq"
+          - "--shortread_complexityfilter_tool prinseqplusplus"
           - "--perform_runmerging"
           - "--perform_runmerging --shortread_clipmerge_mergepairs"
           - "--shortread_complexityfilter false --perform_shortread_hostremoval"