From 3fa2181f498f5e1c994efb06be3a63f459dcf9cc Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Sat, 7 May 2022 06:15:15 +0200 Subject: [PATCH] Fix prinseq tool selection --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index a1ece72..7bb2076 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -38,7 +38,7 @@ jobs: - "--shortread_clipmerge_tool adapterremoval --shortread_clipmerge_mergepairs --shortread_clipmerge_excludeunmerged" - "--shortread_clipmerge_tool adapterremoval --shortread_clipmerge_mergepairs" - "--shortread_complexityfilter_tool bbduk" - - "--shortread_complexityfilter_tool prinseq" + - "--shortread_complexityfilter_tool prinseqplusplus" - "--perform_runmerging" - "--perform_runmerging --shortread_clipmerge_mergepairs" - "--shortread_complexityfilter false --perform_shortread_hostremoval"