From 41526e8a64bdbf40cc28a941e1aaa2430aa66a5d Mon Sep 17 00:00:00 2001
From: "Moritz E. Beber" <midnighter@posteo.net>
Date: Sat, 2 Apr 2022 15:44:39 +0200
Subject: [PATCH] try to fix locale

---
 .github/workflows/ci.yml | 8 ++++++++
 nextflow.config          | 2 +-
 2 files changed, 9 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index a8078e5..b8975b5 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -46,6 +46,14 @@ jobs:
           wget -qO- get.nextflow.io | bash
           sudo mv nextflow /usr/local/bin/
 
+      - name: Show current locale
+        run: locale
+
+      - name: Set UTF-8 enabled locale
+        run: |
+          sudo locale-gen en_US.UTF-8
+          sudo update-locale LANG=en_US.UTF-8
+
       - name: Run pipeline with test data
         # TODO nf-core: You can customise CI pipeline run tests as required
         # For example: adding multiple test runs with different parameters
diff --git a/nextflow.config b/nextflow.config
index 588c0cf..cd6de9c 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -159,7 +159,7 @@ if (!params.igenomes_ignore) {
 
 env {
     PYTHONNOUSERSITE = '1'
-    PYTHONUTF8       = '1'  // MetaPhlAn3 may fail with a UnicodeDecodeError if the locale is not set appropriately.
+    // PYTHONUTF8       = '1'  // MetaPhlAn3 may fail with a UnicodeDecodeError if the locale is not set appropriately.
     R_PROFILE_USER   = "/.Rprofile"
     R_ENVIRON_USER   = "/.Renviron"
     JULIA_DEPOT_PATH = "/usr/local/share/julia"