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Merge pull request #227 from nf-core/mqc-update [skip ci]
Tweak MultiQC config [skip ci]
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commit
43a503096e
1 changed files with 4 additions and 3 deletions
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@ -56,7 +56,8 @@ top_modules:
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- "*_raw_falco_*_report.html"
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- "fastp"
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- "adapterRemoval"
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- "porechop"
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- "porechop":
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extra: "ℹ️: if you get the error message 'Error - was not able to plot data.' this means that porechop did not detect any adapters and therefore no statistics generated."
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- "fastqc":
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name: "FastQC (post-Trimming)"
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path_filters:
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@ -82,7 +83,7 @@ top_modules:
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target: "Bracken"
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doi: "10.7717/peerj-cs.104"
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info: "Estimates species abundances in metagenomics samples by probabilistically re-distributing reads in the taxonomic tree."
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extra: "Note: plot title will say Kraken2 due to the first step of bracken producing the same output format as Kraken. Abundance information is currently not supported in MultiQC."
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extra: "ℹ️: plot title will say Kraken2 due to the first step of bracken producing the same output format as Kraken. Abundance information is currently not supported in MultiQC."
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path_filters:
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- "*.bracken.kraken2.report.txt"
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- "kraken":
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@ -91,7 +92,7 @@ top_modules:
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target: "Centrifuge"
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doi: "10.1101/gr.210641.116"
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info: "is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index. Note: Figure title"
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extra: "Note: plot title will say Kraken2 due to Centrifuge producing the same output format as Kraken. If activated, see the actual Kraken2 results in the section above."
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extra: "ℹ️: plot title will say Kraken2 due to Centrifuge producing the same output format as Kraken. If activated, see the actual Kraken2 results in the section above."
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path_filters:
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- "*.centrifuge.txt"
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- "malt":
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