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Merge pull request #227 from nf-core/mqc-update [skip ci]

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Tweak MultiQC config [skip ci]
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James A. Fellows Yates 2023-01-31 11:11:52 +01:00 committed by GitHub
commit 43a503096e
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1 changed files with 4 additions and 3 deletions
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assets/multiqc_config.yml
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@ -56,7 +56,8 @@ top_modules:
- "*_raw_falco_*_report.html" - "*_raw_falco_*_report.html"
- "fastp" - "fastp"
- "adapterRemoval" - "adapterRemoval"
- "porechop" - "porechop":
extra: "ℹ️: if you get the error message 'Error - was not able to plot data.' this means that porechop did not detect any adapters and therefore no statistics generated."
- "fastqc": - "fastqc":
name: "FastQC (post-Trimming)" name: "FastQC (post-Trimming)"
path_filters: path_filters:
@ -82,7 +83,7 @@ top_modules:
target: "Bracken" target: "Bracken"
doi: "10.7717/peerj-cs.104" doi: "10.7717/peerj-cs.104"
info: "Estimates species abundances in metagenomics samples by probabilistically re-distributing reads in the taxonomic tree." info: "Estimates species abundances in metagenomics samples by probabilistically re-distributing reads in the taxonomic tree."
extra: "Note: plot title will say Kraken2 due to the first step of bracken producing the same output format as Kraken. Abundance information is currently not supported in MultiQC." extra: "ℹ️: plot title will say Kraken2 due to the first step of bracken producing the same output format as Kraken. Abundance information is currently not supported in MultiQC."
path_filters: path_filters:
- "*.bracken.kraken2.report.txt" - "*.bracken.kraken2.report.txt"
- "kraken": - "kraken":
@ -91,7 +92,7 @@ top_modules:
target: "Centrifuge" target: "Centrifuge"
doi: "10.1101/gr.210641.116" doi: "10.1101/gr.210641.116"
info: "is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index. Note: Figure title" info: "is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index. Note: Figure title"
extra: "Note: plot title will say Kraken2 due to Centrifuge producing the same output format as Kraken. If activated, see the actual Kraken2 results in the section above." extra: "ℹ️: plot title will say Kraken2 due to Centrifuge producing the same output format as Kraken. If activated, see the actual Kraken2 results in the section above."
path_filters: path_filters:
- "*.centrifuge.txt" - "*.centrifuge.txt"
- "malt": - "malt":